NGS DATA ANALYSIS SERVICES

Reveal differences in gene expression and pathways.

 

OVERVIEW

We offer top notch analysis data from Next Generation sequencing at a reasonable cost. Read below for high level service details.


In A Rush?  We offer expedited turnaround times by using a cloud computing solution that can be scaled for a small increase in cost.


Need Validation of Our Results?  We have validated our analysis with published data - the results are available upon request.


Have Custom Analysis Needs?  Please contact us with any questions. We will be happy to find a solution that fits your needs!

RNA-SEQ DATA ANALYSIS

Steps:

  • Quality Control

  • Trimming

  • Alignment

  • Alignment Quality Control 

  • Quantification


Deliverables:

  • HTML Quality Control output

  • HTML Quality Control output after trimming

  • Sorted BAM files and indexes

  • Raw read counts matrices (TSV file, python pickle)

  • TPM matrices (TSV file, python pickle)

  • Complete pipeline in Jupyter notebooks and Dockerfile for building Docker image


Cost:

  • $ 60.00 per sample (less than 100 samples). Volume discounts are available. 

CHIP-SEQ AND ATAC-SEQ

Steps:

  • Quality Control

  • Trimming

  • Alignment

  • Alignment Quality Control 

  • Peak calling


Deliverables:

  • HTML Quality Control output

  • HTML Quality Control output after trimming

  • Sorted BAM files and indexes

  • BDG and TDF files per sample

  • Complete pipeline in Jupyter notebooks and Dockerfile for building Docker image


Cost:

  • $ 75.00 per sample (less than 100 samples). Volume discounts are available.

DNA METHYLATION

Data Formats:

  • Illumina Infinium MethylationEPIC

  • Illumina Infinium HumanMethylation450K


Steps:

  • Raw data processing

  • Beta values extracting


Deliverables:

  • Beta values (TSV files, python pickle)


Cost:

  • $ 60.00 per sample (less than 100 samples). Volume discounts are available.