NGS DATA ANALYSIS SERVICES
Reveal differences in gene expression and pathways.
OVERVIEW
We offer top notch analysis data from Next Generation sequencing at a reasonable cost. Read below for high level service details.
In A Rush? We offer expedited turnaround times by using a cloud computing solution that can be scaled for a small increase in cost.
Need Validation of Our Results? We have validated our analysis with published data - the results are available upon request.
Have Custom Analysis Needs? Please contact us with any questions. We will be happy to find a solution that fits your needs!
RNA-SEQ DATA ANALYSIS
Steps:
Quality Control
Trimming
Alignment
Alignment Quality Control
Quantification
Deliverables:
HTML Quality Control output
HTML Quality Control output after trimming
Sorted BAM files and indexes
Raw read counts matrices (TSV file, python pickle)
TPM matrices (TSV file, python pickle)
Complete pipeline in Jupyter notebooks and Dockerfile for building Docker image
Cost:
$ 60.00 per sample (less than 100 samples). Volume discounts are available.
CHIP-SEQ AND ATAC-SEQ
Steps:
Quality Control
Trimming
Alignment
Alignment Quality Control
Peak calling
Deliverables:
HTML Quality Control output
HTML Quality Control output after trimming
Sorted BAM files and indexes
BDG and TDF files per sample
Complete pipeline in Jupyter notebooks and Dockerfile for building Docker image
Cost:
$ 75.00 per sample (less than 100 samples). Volume discounts are available.
DNA METHYLATION
Data Formats:
Illumina Infinium MethylationEPIC
Illumina Infinium HumanMethylation450K
Steps:
Raw data processing
Beta values extracting
Deliverables:
Beta values (TSV files, python pickle)
Cost:
$ 60.00 per sample (less than 100 samples). Volume discounts are available.